J3_1YHQ_015

3D structure

PDB id

1YHQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Azithromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CC*GUCGAU*AACAG

Length

13 nucleotides

Bulged bases

1YHQ|1|0|C|2850, 1YHQ|1|0|A|2852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YHQ_015 not in the Motif Atlas

Homologous match to J3_4V9F_019

Geometric discrepancy: 0.0975

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1YHQ|1|0|C|2831
1YHQ|1|0|C|2832
*
1YHQ|1|0|G|2848
1YHQ|1|0|U|2849
1YHQ|1|0|C|2850
1YHQ|1|0|G|2851
1YHQ|1|0|A|2852
1YHQ|1|0|U|2853
*
1YHQ|1|0|A|2905
1YHQ|1|0|A|2906
1YHQ|1|0|C|2907
1YHQ|1|0|A|2908
1YHQ|1|0|G|2909

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e