J3_1YI2_003

3D structure

PDB id

1YI2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Erythromycin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CAA*UGUUAG*CGUG

Length

13 nucleotides

Bulged bases

1YI2|1|0|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YI2_003 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.0301

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

1YI2|1|0|C|789
1YI2|1|0|A|790
1YI2|1|0|A|791
*
1YI2|1|0|U|823
1YI2|1|0|G|824
1YI2|1|0|U|825
1YI2|1|0|U|826
1YI2|1|0|A|827
1YI2|1|0|G|828
*
1YI2|1|0|C|853
1YI2|1|0|G|854
1YI2|1|0|U|855
1YI2|1|0|G|856

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain P

50S ribosomal protein L19E

Chain Z

50S ribosomal protein L37Ae