J3_1YIT_003

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAA*UGUUAG*CGUG

Length

13 nucleotides

Bulged bases

1YIT|1|0|U|825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YIT_003 not in the Motif Atlas

Homologous match to J3_4V9F_003

Geometric discrepancy: 0.0319

The information below is about J3_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

1YIT|1|0|C|789
1YIT|1|0|A|790
1YIT|1|0|A|791
*
1YIT|1|0|U|823
1YIT|1|0|G|824
1YIT|1|0|U|825
1YIT|1|0|U|826
1YIT|1|0|A|827
1YIT|1|0|G|828
*
1YIT|1|0|C|853
1YIT|1|0|G|854
1YIT|1|0|U|855
1YIT|1|0|G|856

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2P

Chain P

50S RIBOSOMAL PROTEIN L19E

Chain Z

50S RIBOSOMAL PROTEIN L37AE