J3_1YIT_006

3D structure

PDB id

1YIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Virginiamycin M and S Bound To The 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

1YIT|1|0|G|1683, 1YIT|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YIT_006 not in the Motif Atlas

Homologous match to J3_4V9F_006

Geometric discrepancy: 0.0306

The information below is about J3_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

1YIT|1|0|U|1412
1YIT|1|0|A|1413
1YIT|1|0|A|1414
1YIT|1|0|G|1415
*
1YIT|1|0|C|1680
1YIT|1|0|G|1681
1YIT|1|0|A|1682
1YIT|1|0|G|1683
1YIT|1|0|A|1684
1YIT|1|0|A|1685
1YIT|1|0|C|1686
*
1YIT|1|0|G|1695
1YIT|1|0|U|1696
1YIT|1|0|G|1697

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L37E

Chain 2

50S RIBOSOMAL PROTEIN L39E