J3_1YJ9_004

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGA*UCUAAGA*UAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YJ9_004 not in the Motif Atlas

Homologous match to J3_4V9F_004

Geometric discrepancy: 0.1374

The information below is about J3_4V9F_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

1YJ9|1|0|G|1159
1YJ9|1|0|G|1160
1YJ9|1|0|A|1161
*
1YJ9|1|0|U|1185
1YJ9|1|0|C|1186
1YJ9|1|0|U|1187
1YJ9|1|0|A|1188
1YJ9|1|0|A|1189
1YJ9|1|0|G|1190
1YJ9|1|0|A|1191
*
1YJ9|1|0|U|1206
1YJ9|1|0|A|1207
1YJ9|1|0|C|1208

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain G

ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG

Chain I

50S RIBOSOMAL PROTEIN L11P