J3_1YJ9_007

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCUG*CUCAC*GGACACC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YJ9_007 not in the Motif Atlas

Homologous match to J3_4V9F_007

Geometric discrepancy: 0.0646

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

1YJ9|1|0|G|2131
1YJ9|1|0|C|2132
1YJ9|1|0|U|2133
1YJ9|1|0|G|2134
*
1YJ9|1|0|C|2241
1YJ9|1|0|U|2242
1YJ9|1|0|C|2243
1YJ9|1|0|A|2244
1YJ9|1|0|C|2245
*
1YJ9|1|0|G|2256
1YJ9|1|0|G|2257
1YJ9|1|0|A|2258
1YJ9|1|0|C|2259
1YJ9|1|0|A|2260
1YJ9|1|0|C|2261
1YJ9|1|0|C|2262

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2P

Chain M

50S Ribosomal Protein L15E