J3_1YJ9_013

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YJ9_013 not in the Motif Atlas

Homologous match to J3_4V9F_016

Geometric discrepancy: 0.0623

The information below is about J3_4V9F_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

1YJ9|1|0|C|1450
1YJ9|1|0|C|1451
1YJ9|1|0|G|1452
1YJ9|1|0|G|1453
1YJ9|1|0|U|1454
1YJ9|1|0|C|1455
*
1YJ9|1|0|G|1490
1YJ9|1|0|G|1491
1YJ9|1|0|A|1492
1YJ9|1|0|A|1493
1YJ9|1|0|A|1494
*
1YJ9|1|0|U|1511
1YJ9|1|0|G|1512

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain S

50S ribosomal protein L23P