J3_1YJ9_014

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CC*GUCGAU*AACAG

Length

13 nucleotides

Bulged bases

1YJ9|1|0|C|2850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YJ9_014 not in the Motif Atlas

Homologous match to J3_4V9F_019

Geometric discrepancy: 0.0973

The information below is about J3_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1YJ9|1|0|C|2831
1YJ9|1|0|C|2832
*
1YJ9|1|0|G|2848
1YJ9|1|0|U|2849
1YJ9|1|0|C|2850
1YJ9|1|0|G|2851
1YJ9|1|0|A|2852
1YJ9|1|0|U|2853
*
1YJ9|1|0|A|2905
1YJ9|1|0|A|2906
1YJ9|1|0|C|2907
1YJ9|1|0|A|2908
1YJ9|1|0|G|2909

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3P

Chain R

50S ribosomal protein L22P

Chain X

50S ribosomal protein L31e