J3_1YJ9_017

3D structure

PDB id

1YJ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui Containing a three residue deletion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACGAAG*CGUGAUACAG*CGUACU

Length

22 nucleotides

Bulged bases

1YJ9|1|0|U|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YJ9_017 not in the Motif Atlas

Homologous match to J3_4V9F_015

Geometric discrepancy: 0.0428

The information below is about J3_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_59706.1

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-F-cSW-cWW-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

1YJ9|1|0|A|302
1YJ9|1|0|C|303
1YJ9|1|0|G|304
1YJ9|1|0|A|305
1YJ9|1|0|A|306
1YJ9|1|0|G|307
*
1YJ9|1|0|C|323
1YJ9|1|0|G|324
1YJ9|1|0|U|325
1YJ9|1|0|G|326
1YJ9|1|0|A|327
1YJ9|1|0|U|328
1YJ9|1|0|A|329
1YJ9|1|0|C|330
1YJ9|1|0|A|331
1YJ9|1|0|G|332
*
1YJ9|1|0|C|344
1YJ9|1|0|G|345
1YJ9|1|0|U|346
1YJ9|1|0|A|347
1YJ9|1|0|C|348
1YJ9|1|0|U|349

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4E

Chain T

50S ribosomal protein L24P