3D structure

PDB id
1YJW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CAA*UGUUAG*CGUG
Length
13 nucleotides
Bulged bases (A, C, G, U)
825U
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

1YJW|1|0|C|789
1YJW|1|0|A|790
1YJW|1|0|A|791
*
1YJW|1|0|U|823
1YJW|1|0|G|824
1YJW|1|0|U|825
1YJW|1|0|U|826
1YJW|1|0|A|827
1YJW|1|0|G|828
*
1YJW|1|0|C|853
1YJW|1|0|G|854
1YJW|1|0|U|855
1YJW|1|0|G|856

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain A
50S RIBOSOMAL PROTEIN L2P
Chain P
50S RIBOSOMAL PROTEIN L19E
Chain Z
50S RIBOSOMAL PROTEIN L37AE

Coloring options:

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