J3_1YJW_012

3D structure

PDB id

1YJW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of Quinupristin Bound To The G2099A Mutant 50S Ribosomal Subunit Of Haloarcula Marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UG*CUGCAAAG*CA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1YJW_012 not in the Motif Atlas

Geometric match to J3_4V9F_011

Geometric discrepancy: 0.0404

The information below is about J3_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

1YJW|1|0|U|27
1YJW|1|0|G|28
*
1YJW|1|0|C|480
1YJW|1|0|U|481
1YJW|1|0|G|482
1YJW|1|0|C|483
1YJW|1|0|A|484
1YJW|1|0|A|485
1YJW|1|0|A|486
1YJW|1|0|G|487
*
1YJW|1|0|C|515
1YJW|1|0|A|516

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L39E

Chain C

50S RIBOSOMAL PROTEIN L4E

Chain R

50S RIBOSOMAL PROTEIN L22P

Chain T

50S RIBOSOMAL PROTEIN L24P