J3_1Z43_001

3D structure

PDB id

1Z43 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of 7S.S SRP RNA of M. jannaschii

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGUG*CUUUAC*GAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Z43_001 not in the Motif Atlas

Geometric match to J3_3NDB_001

Geometric discrepancy: 0.1376

The information below is about J3_3NDB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_72575.1

Basepair signature

cWW-cWW-F-cWW-cSS-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

1Z43|1|A|G|145
1Z43|1|A|G|146
1Z43|1|A|U|147
1Z43|1|A|G|148
*
1Z43|1|A|C|182
1Z43|1|A|U|183
1Z43|1|A|U|184
1Z43|1|A|U|185
1Z43|1|A|A|186
1Z43|1|A|C|187
*
1Z43|1|A|G|231
1Z43|1|A|A|232
1Z43|1|A|C|233

Current chains

Chain A

RNA (101-MER)

Nearby chains