J3_3NDB_001

3D structure

PDB id

3NDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a signal sequence bound to the signal recognition particle

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUG*CUUUAC*GAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_72575.1

Basepair signature

cWW-cWW-F-cWW-cSS-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

3NDB|1|M|G|145
3NDB|1|M|G|146
3NDB|1|M|U|147
3NDB|1|M|G|148
*
3NDB|1|M|C|182
3NDB|1|M|U|183
3NDB|1|M|U|184
3NDB|1|M|U|185
3NDB|1|M|A|186
3NDB|1|M|C|187
*
3NDB|1|M|G|231
3NDB|1|M|A|232
3NDB|1|M|C|233

Current chains

Chain M

SRP RNA

Nearby chains