J3_1Z58_010

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

1Z58|1|2|G|510, 1Z58|1|2|G|514, 1Z58|1|2|A|518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_1Z58_010 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.314

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

1Z58|1|2|G|30
1Z58|1|2|C|31
*
1Z58|1|2|G|485
1Z58|1|2|U|486
1Z58|1|2|G|487
1Z58|1|2|A|488
1Z58|1|2|A|489
1Z58|1|2|A|490
1Z58|1|2|A|491
1Z58|1|2|G|492
1Z58|1|2|A|493
1Z58|1|2|A|494
1Z58|1|2|C|495
*
1Z58|1|2|G|506
1Z58|1|2|A|507
1Z58|1|2|G|508
1Z58|1|2|U|509
1Z58|1|2|G|510
1Z58|1|2|A|511
1Z58|1|2|A|512
1Z58|1|2|A|513
1Z58|1|2|G|514
1Z58|1|2|A|515
1Z58|1|2|G|516
1Z58|1|2|A|517
1Z58|1|2|A|518
1Z58|1|2|C|519
1Z58|1|2|C|520

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains