J3_1Z58_013

3D structure

PDB id

1Z58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex of the ribosome large subunit with rapamycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGAGCUUAAGUUGAAAAACGGAGGCGGAG*CGAGU*GGCGGCAUUAG

Length

45 nucleotides

Bulged bases

1Z58|1|2|G|612, 1Z58|1|2|A|624, 1Z58|1|2|A|625, 1Z58|1|2|A|626, 1Z58|1|2|A|648, 1Z58|1|2|A|665, 1Z58|1|2|U|666, 1Z58|1|2|U|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1Z58|1|2|C|611
1Z58|1|2|G|612
1Z58|1|2|A|613
1Z58|1|2|G|614
1Z58|1|2|C|615
1Z58|1|2|U|616
1Z58|1|2|U|617
1Z58|1|2|A|618
1Z58|1|2|A|619
1Z58|1|2|G|620
1Z58|1|2|U|621
1Z58|1|2|U|622
1Z58|1|2|G|623
1Z58|1|2|A|624
1Z58|1|2|A|625
1Z58|1|2|A|626
1Z58|1|2|A|627
1Z58|1|2|A|628
1Z58|1|2|C|629
1Z58|1|2|G|630
1Z58|1|2|G|631
1Z58|1|2|A|632
1Z58|1|2|G|633
1Z58|1|2|G|634
1Z58|1|2|C|635
1Z58|1|2|G|636
1Z58|1|2|G|637
1Z58|1|2|A|638
1Z58|1|2|G|639
*
1Z58|1|2|C|646
1Z58|1|2|G|647
1Z58|1|2|A|648
1Z58|1|2|G|649
1Z58|1|2|U|650
*
1Z58|1|2|G|659
1Z58|1|2|G|660
1Z58|1|2|C|661
1Z58|1|2|G|662
1Z58|1|2|G|663
1Z58|1|2|C|664
1Z58|1|2|A|665
1Z58|1|2|U|666
1Z58|1|2|U|667
1Z58|1|2|A|668
1Z58|1|2|G|669

Current chains

Chain 2

23S RIBOSOMAL RNA

Nearby chains