J3_22TU_002

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

22TU|1|L5|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

22TU|1|L5|C|112
22TU|1|L5|A|113
22TU|1|L5|G|114
22TU|1|L5|C|115
22TU|1|L5|G|116
*
22TU|1|L5|C|155
22TU|1|L5|G|156
22TU|1|L5|U|157
22TU|1|L5|A|158
22TU|1|L5|C|159
22TU|1|L5|G|160
*
22TU|1|L5|C|275
22TU|1|L5|C|276
22TU|1|L5|G|277
22TU|1|L5|G|278

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Li

60S ribosomal protein L36