J3_22TU_042

3D structure

PDB id

22TU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with DHX29

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

22TU|1|S2|U|1535, 22TU|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

22TU|1|S2|C|1532
22TU|1|S2|A|1533
22TU|1|S2|C|1534
22TU|1|S2|U|1535
22TU|1|S2|G|1536
*
22TU|1|S2|C|1597
22TU|1|S2|G|1598
22TU|1|S2|U|1599
22TU|1|S2|G|1600
22TU|1|S2|A|1601
22TU|1|S2|U|1602
22TU|1|S2|G|1603
22TU|1|S2|G|1604
*
22TU|1|S2|C|1635
22TU|1|S2|G|1636
22TU|1|S2|A|1637
22TU|1|S2|G|1638

Current chains

Chain S2

18S rRNA

Nearby chains

Chain C4

Transfer RNA; tRNA

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain SZ

40S ribosomal protein S25