J3_23WI_006
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 23WI|1|5|A|2388, 23WI|1|5|U|2390, 23WI|1|5|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_23WI_006 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1648
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
23WI|1|5|G|2282
23WI|1|5|C|2283
23WI|1|5|A|2284
*
23WI|1|5|U|2384
23WI|1|5|C|2385
23WI|1|5|A|2386
23WI|1|5|U|2387
23WI|1|5|A|2388
23WI|1|5|G|2389
23WI|1|5|U|2390
23WI|1|5|G|2391
23WI|1|5|A|2392
23WI|1|5|U|2393
23WI|1|5|C|2394
23WI|1|5|C|2395
*
23WI|1|5|G|2421
23WI|1|5|C|2422
23WI|1|5|U|2423
23WI|1|5|C|2424
23WI|1|5|A|2425
23WI|1|5|A|2426
23WI|1|5|C|2427
Current chains
- Chain 5
- RNA (2014-MER)
Nearby chains
- Chain 1
- 50S ribosomal protein L33
- Chain 3
- 50S ribosomal protein L35
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- Large ribosomal subunit protein uL15
- Chain W
- 50S ribosomal protein L27
Coloring options: