J3_23WI_020
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCCUAAC*GGGGAAUAU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 23WI|1|a|C|48, 23WI|1|a|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_23WI_020 not in the Motif Atlas
- Homologous match to J3_6CZR_058
- Geometric discrepancy: 0.2226
- The information below is about J3_6CZR_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.3
- Basepair signature
- cWW-cWW-cSW-cWS-tHW-cWW-cWW-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
23WI|1|a|G|46
23WI|1|a|C|47
23WI|1|a|C|48
23WI|1|a|U|49
23WI|1|a|A|50
23WI|1|a|A|51
23WI|1|a|C|52
*
23WI|1|a|G|359
23WI|1|a|G|360
23WI|1|a|G|361
23WI|1|a|G|362
23WI|1|a|A|363
23WI|1|a|A|364
23WI|1|a|U|365
23WI|1|a|A|366
23WI|1|a|U|367
*
23WI|1|a|A|393
23WI|1|a|G|394
23WI|1|a|C|395
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
- Chain p
- 30S ribosomal protein S16
Coloring options: