J3_23WI_021

3D structure

PDB id

23WI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

23WI|1|a|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_23WI_021 not in the Motif Atlas

Geometric match to J3_8B0X_002

Geometric discrepancy: 0.108

The information below is about J3_8B0X_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_01633.3

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

23WI|1|a|C|586
23WI|1|a|G|587
23WI|1|a|G|588
*
23WI|1|a|C|651
23WI|1|a|U|652
23WI|1|a|U|653
23WI|1|a|G|654
*
23WI|1|a|C|754
23WI|1|a|G|755

Current chains

Chain a

RNA (1539-MER)

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain l

Small ribosomal subunit protein uS12

Chain o

Small ribosomal subunit protein uS15

Chain q

Small ribosomal subunit protein uS17