J3_23WI_027
3D structure
- PDB id
- 23WI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of 70S ribosome (11x11) using CRYO ARM 300II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 23WI|1|a|A|975, 23WI|1|a|G|976, 23WI|1|a|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_23WI_027 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0826
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.3
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
23WI|1|a|U|955
23WI|1|a|U|956
23WI|1|a|U|957
23WI|1|a|A|958
23WI|1|a|A|959
23WI|1|a|U|960
23WI|1|a|U|961
23WI|1|a|C|962
*
23WI|1|a|G|973
23WI|1|a|A|974
23WI|1|a|A|975
23WI|1|a|G|976
23WI|1|a|A|977
23WI|1|a|A|978
23WI|1|a|C|979
23WI|1|a|C|980
23WI|1|a|U|981
23WI|1|a|U|982
23WI|1|a|A|983
23WI|1|a|C|984
*
23WI|1|a|G|1221
23WI|1|a|G|1222
23WI|1|a|C|1223
23WI|1|a|U|1224
23WI|1|a|A|1225
Current chains
- Chain a
- RNA (1539-MER)
Nearby chains
- Chain j
- Small ribosomal subunit protein uS10
- Chain m
- Small ribosomal subunit protein uS13
- Chain n
- Small ribosomal subunit protein uS14
- Chain s
- Small ribosomal subunit protein uS19
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