J3_28LN_002

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCGGCUUUG*C(PSU)AG

Length

29 nucleotides

Bulged bases

28LN|1|A2|U|285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|C|223
28LN|1|A2|A|224
28LN|1|A2|G|225
28LN|1|A2|A|226
28LN|1|A2|U|227
28LN|1|A2|C|228
28LN|1|A2|A|229
28LN|1|A2|A|230
28LN|1|A2|A|231
28LN|1|A2|A|232
28LN|1|A2|C|233
28LN|1|A2|C|234
28LN|1|A2|A|235
28LN|1|A2|A|236
28LN|1|A2|C|237
28LN|1|A2|C|238
*
28LN|1|A2|G|280
28LN|1|A2|C|281
28LN|1|A2|G|282
28LN|1|A2|G|283
28LN|1|A2|C|284
28LN|1|A2|U|285
28LN|1|A2|U|286
28LN|1|A2|U|287
28LN|1|A2|G|288
*
28LN|1|A2|C|295
28LN|1|A2|PSU|296
28LN|1|A2|A|297
28LN|1|A2|G|298

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AE

Small ribosomal subunit protein eS4, X isoform

Chain AG

40S ribosomal protein S6

Chain AI

40S ribosomal protein S8

Chain AL

Small ribosomal subunit protein uS17