J3_28LN_005

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

A(PSU)C*(OMG)GAAUAGG*CAUGAU

Length

17 nucleotides

Bulged bases

28LN|1|A2|U|871, 28LN|1|A2|G|873, 28LN|1|A2|A|913

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|A|685
28LN|1|A2|PSU|686
28LN|1|A2|C|687
*
28LN|1|A2|OMG|867
28LN|1|A2|G|868
28LN|1|A2|A|869
28LN|1|A2|A|870
28LN|1|A2|U|871
28LN|1|A2|A|872
28LN|1|A2|G|873
28LN|1|A2|G|874
*
28LN|1|A2|C|912
28LN|1|A2|A|913
28LN|1|A2|U|914
28LN|1|A2|G|915
28LN|1|A2|A|916
28LN|1|A2|U|917

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AH

40S ribosomal protein S7

Chain AL

Small ribosomal subunit protein uS17

Chain AN

40S ribosomal protein S13

Chain AW

40S ribosomal protein S15a

Chain BR

60S ribosomal protein L19