J3_28LN_011

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG

Length

25 nucleotides

Bulged bases

28LN|1|A2|G|1256, 28LN|1|A2|A|1258, 28LN|1|A2|A|1260

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|C|1237
28LN|1|A2|PSU|1238
28LN|1|A2|U|1239
28LN|1|A2|A|1240
28LN|1|A2|A|1241
28LN|1|A2|U|1242
28LN|1|A2|U|1243
28LN|1|A2|PSU|1244
*
28LN|1|A2|G|1255
28LN|1|A2|G|1256
28LN|1|A2|G|1257
28LN|1|A2|A|1258
28LN|1|A2|A|1259
28LN|1|A2|A|1260
28LN|1|A2|C|1261
28LN|1|A2|C|1262
28LN|1|A2|U|1263
28LN|1|A2|C|1264
28LN|1|A2|A|1265
28LN|1|A2|C|1266
*
28LN|1|A2|G|1516
28LN|1|A2|G|1517
28LN|1|A2|C|1518
28LN|1|A2|U|1519
28LN|1|A2|G|1520

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AP

40S ribosomal protein S15

Chain AS

Small ribosomal subunit protein uS13

Chain AU

40S ribosomal protein S20

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin