J3_28LN_012

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

(OMC)CGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

28LN|1|A2|G|1274, 28LN|1|A2|G|1507, 28LN|1|A2|U|1509

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|A2|OMC|1272
28LN|1|A2|C|1273
28LN|1|A2|G|1274
28LN|1|A2|G|1275
28LN|1|A2|A|1276
28LN|1|A2|C|1277
*
28LN|1|A2|G|1320
28LN|1|A2|G|1321
28LN|1|A2|G|1322
28LN|1|A2|U|1323
28LN|1|A2|G|1324
*
28LN|1|A2|U|1504
28LN|1|A2|U|1505
28LN|1|A2|A|1506
28LN|1|A2|G|1507
28LN|1|A2|A|1508
28LN|1|A2|U|1509
28LN|1|A2|G|1510

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AK

40S ribosomal protein S10

Chain Ad

40S ribosomal protein S29

Chain Af

Ubiquitin