J3_28LN_022

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGUCC*GGUGCG*CGACG

Length

17 nucleotides

Bulged bases

28LN|1|B5|C|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|451
28LN|1|B5|A|452
28LN|1|B5|G|453
28LN|1|B5|U|454
28LN|1|B5|C|455
28LN|1|B5|C|456
*
28LN|1|B5|G|700
28LN|1|B5|G|701
28LN|1|B5|U|702
28LN|1|B5|G|703
28LN|1|B5|C|704
28LN|1|B5|G|705
*
28LN|1|B5|C|1291
28LN|1|B5|G|1292
28LN|1|B5|A|1293
28LN|1|B5|C|1294
28LN|1|B5|G|1295

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

Large ribosomal subunit protein eL6

Chain Be

60S ribosomal protein L32

Chain Bf

60S ribosomal protein L35a

Chain Br

Large ribosomal subunit protein eL28