J3_28LN_023

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

28LN|1|B5|G|964, 28LN|1|B5|C|966, 28LN|1|B5|C|967, 28LN|1|B5|C|968, 28LN|1|B5|U|970, 28LN|1|B5|C|1279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|712
28LN|1|B5|C|713
*
28LN|1|B5|G|954
28LN|1|B5|A|955
28LN|1|B5|G|956
28LN|1|B5|G|957
28LN|1|B5|G|958
28LN|1|B5|A|959
28LN|1|B5|G|960
28LN|1|B5|C|961
28LN|1|B5|G|962
28LN|1|B5|A|963
28LN|1|B5|G|964
28LN|1|B5|A|965
28LN|1|B5|C|966
28LN|1|B5|C|967
28LN|1|B5|C|968
28LN|1|B5|G|969
28LN|1|B5|U|970
28LN|1|B5|C|971
28LN|1|B5|G|972
28LN|1|B5|C|973
28LN|1|B5|C|974
28LN|1|B5|G|975
*
28LN|1|B5|C|1277
28LN|1|B5|A|1278
28LN|1|B5|C|1279
28LN|1|B5|G|1280
28LN|1|B5|G|1281
28LN|1|B5|G|1282
28LN|1|B5|G|1283

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BE

Large ribosomal subunit protein eL6

Chain BF

Large ribosomal subunit protein uL30

Chain Be

60S ribosomal protein L32