J3_28LN_024
3D structure
- PDB id
- 28LN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- XBP1u-stalled RPL4 RNC in complex with NAC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGA(A2M)C(PSU)A*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 28LN|1|B5|A2M|1533, 28LN|1|B5|G|1640, 28LN|1|B5|A|1641
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28LN_024 not in the Motif Atlas
- Homologous match to J3_9PN5_008
- Geometric discrepancy: 0.0673
- The information below is about J3_9PN5_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.4
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 12
Unit IDs
28LN|1|B5|U|1530
28LN|1|B5|G|1531
28LN|1|B5|A|1532
28LN|1|B5|A2M|1533
28LN|1|B5|C|1534
28LN|1|B5|PSU|1535
28LN|1|B5|A|1536
*
28LN|1|B5|U|1621
28LN|1|B5|A|1622
28LN|1|B5|G|1623
*
28LN|1|B5|C|1639
28LN|1|B5|G|1640
28LN|1|B5|A|1641
28LN|1|B5|A|1642
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B1
- Large ribosomal subunit protein uL4,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form,X-box-binding protein 1, luminal form
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BN
- 60S ribosomal protein L15
- Chain Bj
- Large ribosomal subunit protein eL37
- Chain Bl
- 60S ribosomal protein L39
Coloring options: