J3_28LN_030

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCGGUC*GGAGU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|U|2439
28LN|1|B5|C|2440
28LN|1|B5|G|2441
28LN|1|B5|G|2442
28LN|1|B5|U|2443
28LN|1|B5|C|2444
*
28LN|1|B5|G|2514
28LN|1|B5|G|2515
28LN|1|B5|A|2516
28LN|1|B5|G|2517
28LN|1|B5|U|2518
*
28LN|1|B5|A|2535
28LN|1|B5|A|2536

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BX

60S ribosomal protein L23a

Chain Bg

60S ribosomal protein L34

Chain Bk

60S ribosomal protein L38

Chain Bl

60S ribosomal protein L39