J3_28LN_037

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

28LN|1|B5|A|4279, 28LN|1|B5|A|4281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|4240
28LN|1|B5|U|4241
28LN|1|B5|C|4242
*
28LN|1|B5|G|4266
28LN|1|B5|A|4267
28LN|1|B5|G|4268
*
28LN|1|B5|C|4277
28LN|1|B5|A|4278
28LN|1|B5|A|4279
28LN|1|B5|A|4280
28LN|1|B5|A|4281
28LN|1|B5|G|4282

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L11

Chain BT

60S ribosomal protein L21