J3_28LN_039

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUGG*CCUUC*GCACCGCACGUUC

Length

23 nucleotides

Bulged bases

28LN|1|B5|U|4881, 28LN|1|B5|A|4937, 28LN|1|B5|C|4939, 28LN|1|B5|A|4942, 28LN|1|B5|C|4943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|G|4750
28LN|1|B5|U|4751
28LN|1|B5|U|4752
28LN|1|B5|G|4753
28LN|1|B5|G|4754
*
28LN|1|B5|C|4878
28LN|1|B5|C|4879
28LN|1|B5|U|4880
28LN|1|B5|U|4881
28LN|1|B5|C|4882
*
28LN|1|B5|G|4935
28LN|1|B5|C|4936
28LN|1|B5|A|4937
28LN|1|B5|C|4938
28LN|1|B5|C|4939
28LN|1|B5|G|4940
28LN|1|B5|C|4941
28LN|1|B5|A|4942
28LN|1|B5|C|4943
28LN|1|B5|G|4944
28LN|1|B5|U|4945
28LN|1|B5|U|4946
28LN|1|B5|C|4947

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

Large ribosomal subunit protein eL6

Chain BM

60S ribosomal protein L14

Chain BO

60S ribosomal protein L13a

Chain Bf

60S ribosomal protein L35a