J3_28LN_040

3D structure

PDB id

28LN (explore in PDB, NAKB, or RNA 3D Hub)

Description

XBP1u-stalled RPL4 RNC in complex with NAC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CA(PSU)(PSU)CG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

28LN|1|B5|U|4988, 28LN|1|B5|C|4989

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28LN|1|B5|C|4969
28LN|1|B5|A|4970
28LN|1|B5|PSU|4971
28LN|1|B5|PSU|4972
28LN|1|B5|C|4973
28LN|1|B5|G|4974
*
28LN|1|B5|C|4982
28LN|1|B5|C|4983
28LN|1|B5|U|4984
28LN|1|B5|G|4985
28LN|1|B5|C|4986
28LN|1|B5|U|4987
28LN|1|B5|U|4988
28LN|1|B5|C|4989
28LN|1|B5|U|4990
*
28LN|1|B5|A|5059
28LN|1|B5|A|5060
28LN|1|B5|G|5061
28LN|1|B5|G|5062

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL3

Chain BP

60S ribosomal protein L17

Chain Bd

60S ribosomal protein L31