J3_28UH_016
3D structure
- PDB id
- 28UH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational ground state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.06 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 28UH|1|A|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28UH_016 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1745
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
28UH|1|A|U|1116
28UH|1|A|A|1117
28UH|1|A|U|1118
*
28UH|1|A|A|1155
28UH|1|A|G|1156
28UH|1|A|A|1157
28UH|1|A|C|1158
28UH|1|A|U|1159
28UH|1|A|G|1160
28UH|1|A|C|1161
*
28UH|1|A|G|1175
28UH|1|A|A|1176
28UH|1|A|G|1177
28UH|1|A|G|1178
28UH|1|A|A|1179
28UH|1|A|A|1180
28UH|1|A|G|1181
28UH|1|A|G|1182
28UH|1|A|U|1183
28UH|1|A|G|1184
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain I
- Small ribosomal subunit protein uS9
- Chain J
- Small ribosomal subunit protein uS10
- Chain N
- Small ribosomal subunit protein uS14
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