J3_28UI_011
3D structure
- PDB id
- 28UI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A- and P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUACG
- Length
- 18 nucleotides
- Bulged bases
- 28UI|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28UI_011 not in the Motif Atlas
- Homologous match to J3_6CZR_063
- Geometric discrepancy: 0.173
- The information below is about J3_6CZR_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.1
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 3
Unit IDs
28UI|1|A|C|990
28UI|1|A|U|991
28UI|1|A|U|992
28UI|1|A|G|993
28UI|1|A|A|994
28UI|1|A|C|995
28UI|1|A|A|996
28UI|1|A|U|997
*
28UI|1|A|A|1044
28UI|1|A|C|1045
28UI|1|A|A|1046
28UI|1|A|G|1047
*
28UI|1|A|C|1210
28UI|1|A|U|1211
28UI|1|A|U|1212
28UI|1|A|A|1213
28UI|1|A|C|1214
28UI|1|A|G|1215
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain N
- Small ribosomal subunit protein uS14
Coloring options: