J3_28UJ_010

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

28UJ|1|A|U|1212, 28UJ|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28UJ_010 not in the Motif Atlas

Geometric match to J3_8B0X_008

Geometric discrepancy: 0.0919

The information below is about J3_8B0X_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

28UJ|1|A|C|990
28UJ|1|A|U|991
28UJ|1|A|U|992
28UJ|1|A|G|993
*
28UJ|1|A|C|1045
28UJ|1|A|A|1046
28UJ|1|A|G|1047
*
28UJ|1|A|C|1210
28UJ|1|A|U|1211
28UJ|1|A|U|1212
28UJ|1|A|A|1213
28UJ|1|A|C|1214
28UJ|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14