J3_28UJ_024
3D structure
- PDB id
- 28UJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.16 Å
Loop
- Sequence
- CAG*CGAAC*GAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28UJ_024 not in the Motif Atlas
- Homologous match to J3_7A0S_005
- Geometric discrepancy: 0.108
- The information below is about J3_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69816.3
- Basepair signature
- cWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 11
Unit IDs
28UJ|1|a|C|698
28UJ|1|a|A|699
28UJ|1|a|G|700
*
28UJ|1|a|C|732
28UJ|1|a|G|733
28UJ|1|a|A|734
28UJ|1|a|A|735
28UJ|1|a|C|736
*
28UJ|1|a|G|760
28UJ|1|a|A|761
28UJ|1|a|U|762
28UJ|1|a|G|763
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain c
- Large ribosomal subunit protein uL2
Coloring options: