J3_28UJ_025

3D structure

PDB id

28UJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, trapped conformational excited state of SSU-h44 apical loop, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.16 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

28UJ|1|a|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28UJ_025 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1964

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

28UJ|1|a|C|1298
28UJ|1|a|G|1299
28UJ|1|a|G|1300
28UJ|1|a|A|1301
28UJ|1|a|A|1302
28UJ|1|a|G|1303
*
28UJ|1|a|C|1625
28UJ|1|a|A|1626
28UJ|1|a|G|1627
*
28UJ|1|a|C|1639
28UJ|1|a|A|1640
28UJ|1|a|A|1641
28UJ|1|a|G|1642

Current chains

Chain a

23S rRNA

Nearby chains