J3_28UL_007
3D structure
- PDB id
- 28UL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome, conformational ground state mutation in SSU-h41, with A/P- and P/E-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28UL_007 not in the Motif Atlas
- Homologous match to J3_6CZR_061
- Geometric discrepancy: 0.1093
- The information below is about J3_6CZR_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.3
- Basepair signature
- cWW-tSH-cSS-F-cWW-cSS-tWW-tHH-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
28UL|1|A|C|936
28UL|1|A|A|937
28UL|1|A|A|938
28UL|1|A|G|939
*
28UL|1|A|C|1344
28UL|1|A|U|1345
28UL|1|A|A|1346
28UL|1|A|G|1347
28UL|1|A|U|1348
28UL|1|A|A|1349
28UL|1|A|A|1350
*
28UL|1|A|U|1372
28UL|1|A|G|1373
28UL|1|A|A|1374
28UL|1|A|A|1375
28UL|1|A|U|1376
28UL|1|A|A|1377
28UL|1|A|C|1378
28UL|1|A|G|1379
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
Coloring options: