J3_28UM_011

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

28UM|1|A|U|1212, 28UM|1|A|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28UM_011 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.1799

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

28UM|1|A|C|990
28UM|1|A|U|991
28UM|1|A|U|992
28UM|1|A|G|993
28UM|1|A|A|994
28UM|1|A|C|995
28UM|1|A|A|996
28UM|1|A|U|997
*
28UM|1|A|A|1044
28UM|1|A|C|1045
28UM|1|A|A|1046
28UM|1|A|G|1047
*
28UM|1|A|C|1210
28UM|1|A|U|1211
28UM|1|A|U|1212
28UM|1|A|A|1213
28UM|1|A|C|1214
28UM|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14