J3_28UM_021

3D structure

PDB id

28UM (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

28UM|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28UM_021 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0257

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

28UM|1|a|G|297
28UM|1|a|G|298
28UM|1|a|A|299
28UM|1|a|A|300
28UM|1|a|G|301
*
28UM|1|a|C|316
28UM|1|a|G|317
28UM|1|a|C|318
28UM|1|a|G|319
28UM|1|a|A|320
28UM|1|a|U|321
28UM|1|a|A|322
28UM|1|a|C|323
28UM|1|a|A|324
28UM|1|a|G|325
*
28UM|1|a|C|337
28UM|1|a|G|338
28UM|1|a|U|339
28UM|1|a|A|340
28UM|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24