J3_28UN_022

3D structure

PDB id

28UN (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome, conformational excited state mutation in SSU-h41, with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

28UN|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_28UN_022 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0309

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

28UN|1|a|G|297
28UN|1|a|G|298
28UN|1|a|A|299
28UN|1|a|A|300
28UN|1|a|G|301
*
28UN|1|a|C|316
28UN|1|a|G|317
28UN|1|a|C|318
28UN|1|a|G|319
28UN|1|a|A|320
28UN|1|a|U|321
28UN|1|a|A|322
28UN|1|a|C|323
28UN|1|a|A|324
28UN|1|a|G|325
*
28UN|1|a|C|337
28UN|1|a|G|338
28UN|1|a|U|339
28UN|1|a|A|340
28UN|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24