J3_28ZU_014

3D structure

PDB id

28ZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with Kozak mRNA and eIF1A W70A mutant

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

28ZU|1|S2|U|1535, 28ZU|1|S2|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZU|1|S2|C|1532
28ZU|1|S2|A|1533
28ZU|1|S2|C|1534
28ZU|1|S2|U|1535
28ZU|1|S2|G|1536
*
28ZU|1|S2|C|1597
28ZU|1|S2|G|1598
28ZU|1|S2|U|1599
28ZU|1|S2|G|1600
28ZU|1|S2|A|1601
28ZU|1|S2|U|1602
28ZU|1|S2|G|1603
28ZU|1|S2|G|1604
*
28ZU|1|S2|C|1635
28ZU|1|S2|G|1636
28ZU|1|S2|A|1637
28ZU|1|S2|G|1638

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SS

40S ribosomal protein S18

Chain ST

Small ribosomal subunit protein eS19

Chain SZ

Small ribosomal subunit protein eS25