J3_28ZV_006

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUUC*GGACCAGAG*CAU(PSU)(PSU)

Length

18 nucleotides

Bulged bases

28ZV|1|S2|G|991

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZV|1|S2|A|938
28ZV|1|S2|U|939
28ZV|1|S2|U|940
28ZV|1|S2|C|941
*
28ZV|1|S2|G|985
28ZV|1|S2|G|986
28ZV|1|S2|A|987
28ZV|1|S2|C|988
28ZV|1|S2|C|989
28ZV|1|S2|A|990
28ZV|1|S2|G|991
28ZV|1|S2|A|992
28ZV|1|S2|G|993
*
28ZV|1|S2|C|1000
28ZV|1|S2|A|1001
28ZV|1|S2|U|1002
28ZV|1|S2|PSU|1003
28ZV|1|S2|PSU|1004

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26