J3_28ZV_007

3D structure

PDB id

28ZV (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (non-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*(PSU)UCCG*CAAAG

Length

13 nucleotides

Bulged bases

28ZV|1|S2|C|1138, 28ZV|1|S2|A|1150

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZV|1|S2|C|1094
28ZV|1|S2|C|1095
28ZV|1|S2|G|1096
*
28ZV|1|S2|PSU|1136
28ZV|1|S2|U|1137
28ZV|1|S2|C|1138
28ZV|1|S2|C|1139
28ZV|1|S2|G|1140
*
28ZV|1|S2|C|1147
28ZV|1|S2|A|1148
28ZV|1|S2|A|1149
28ZV|1|S2|A|1150
28ZV|1|S2|G|1151

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SA

40S ribosomal protein SA

Chain SV

40S ribosomal protein S21

Chain SW

40S ribosomal protein S15a

Chain Sa

40S ribosomal protein S26

Chain Sb

40S ribosomal protein S27