J3_28ZX_009
3D structure
- PDB id
- 28ZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 48S PIC with mRNA (Kozak_1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGA*UAC*G(M7G)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: M7G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_28ZX_009 not in the Motif Atlas
- Homologous match to J3_9H3G_036
- Geometric discrepancy: 0.056
- The information below is about J3_9H3G_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.4
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
28ZX|1|S2|U|1225
28ZX|1|S2|G|1226
28ZX|1|S2|G|1227
28ZX|1|S2|A|1228
*
28ZX|1|S2|U|1530
28ZX|1|S2|A|1531
28ZX|1|S2|C|1532
*
28ZX|1|S2|G|1638
28ZX|1|S2|M7G|1639
28ZX|1|S2|A|1640
28ZX|1|S2|A|1641
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain D
- Eukaryotic translation initiation factor 2 subunit 1
- Chain G
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain SS
- 40S ribosomal protein S18
- Chain ST
- Small ribosomal subunit protein eS19
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