J3_28ZX_011

3D structure

PDB id

28ZX (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMC)CGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

28ZX|1|S2|G|1274, 28ZX|1|S2|G|1507, 28ZX|1|S2|U|1509

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZX|1|S2|OMC|1272
28ZX|1|S2|C|1273
28ZX|1|S2|G|1274
28ZX|1|S2|G|1275
28ZX|1|S2|A|1276
28ZX|1|S2|C|1277
*
28ZX|1|S2|G|1320
28ZX|1|S2|G|1321
28ZX|1|S2|G|1322
28ZX|1|S2|U|1323
28ZX|1|S2|G|1324
*
28ZX|1|S2|U|1504
28ZX|1|S2|U|1505
28ZX|1|S2|A|1506
28ZX|1|S2|G|1507
28ZX|1|S2|A|1508
28ZX|1|S2|U|1509
28ZX|1|S2|G|1510

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein S10

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin