J3_28ZY_005

3D structure

PDB id

28ZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 48S PIC with mRNA (Kozak_2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AUUC*GGACCAGAG*CAU(PSU)(PSU)

Length

18 nucleotides

Bulged bases

28ZY|1|S2|G|991

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

28ZY|1|S2|A|938
28ZY|1|S2|U|939
28ZY|1|S2|U|940
28ZY|1|S2|C|941
*
28ZY|1|S2|G|985
28ZY|1|S2|G|986
28ZY|1|S2|A|987
28ZY|1|S2|C|988
28ZY|1|S2|C|989
28ZY|1|S2|A|990
28ZY|1|S2|G|991
28ZY|1|S2|A|992
28ZY|1|S2|G|993
*
28ZY|1|S2|C|1000
28ZY|1|S2|A|1001
28ZY|1|S2|U|1002
28ZY|1|S2|PSU|1003
28ZY|1|S2|PSU|1004

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SB

40S ribosomal protein S3a

Chain SN

40S ribosomal protein S13

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26