J3_2AAR_013

3D structure

PDB id

2AAR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trigger factor binding domain in biologically homologous complex with eubacterial ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUG*CGAUAGCGCAUAGUAC*GGAAAG

Length

26 nucleotides

Bulged bases

2AAR|1|0|U|460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AAR_013 not in the Motif Atlas

Homologous match to J3_7A0S_016

Geometric discrepancy: 0.1134

The information below is about J3_7A0S_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.2

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

2AAR|1|0|C|32
2AAR|1|0|C|33
2AAR|1|0|U|34
2AAR|1|0|G|35
*
2AAR|1|0|C|457
2AAR|1|0|G|458
2AAR|1|0|A|459
2AAR|1|0|U|460
2AAR|1|0|A|461
2AAR|1|0|G|462
2AAR|1|0|C|463
2AAR|1|0|G|464
2AAR|1|0|C|465
2AAR|1|0|A|466
2AAR|1|0|U|467
2AAR|1|0|A|468
2AAR|1|0|G|469
2AAR|1|0|U|470
2AAR|1|0|A|471
2AAR|1|0|C|472
*
2AAR|1|0|G|479
2AAR|1|0|G|480
2AAR|1|0|A|481
2AAR|1|0|A|482
2AAR|1|0|A|483
2AAR|1|0|G|484

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23