J3_2AW7_004

3D structure

PDB id

2AW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli at 3.5 A resolution. This file contains the 30S subunit of the second 70S ribosome. The entire crystal structure contains two 70S ribosomes and is described in remark 400.

Experimental method

X-RAY DIFFRACTION

Resolution

3.46 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCUA

Length

25 nucleotides

Bulged bases

2AW7|1|A|A|975, 2AW7|1|A|G|976, 2AW7|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_2AW7_004 not in the Motif Atlas

Geometric match to J3_4LFB_004

Geometric discrepancy: 0.2246

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

2AW7|1|A|U|955
2AW7|1|A|U|956
2AW7|1|A|U|957
2AW7|1|A|A|958
2AW7|1|A|A|959
2AW7|1|A|U|960
2AW7|1|A|U|961
2AW7|1|A|C|962
*
2AW7|1|A|G|973
2AW7|1|A|A|974
2AW7|1|A|A|975
2AW7|1|A|G|976
2AW7|1|A|A|977
2AW7|1|A|A|978
2AW7|1|A|C|979
2AW7|1|A|C|980
2AW7|1|A|U|981
2AW7|1|A|U|982
2AW7|1|A|A|983
2AW7|1|A|C|984
*
2AW7|1|A|G|1221
2AW7|1|A|G|1222
2AW7|1|A|C|1223
2AW7|1|A|U|1224
2AW7|1|A|A|1225

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19