2AW7 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2AW7_001 | 1/A/12:22 | No text annotation | geometric HL_5J7L_001 HL_89881.5 | |
| HL_2AW7_003 | 1/A/158:163 | GNRA | geometric HL_5B2T_003 HL_37824.8 | |
| HL_2AW7_004 | 1/A/186:191 | GNRA | geometric HL_7A0S_063 HL_37824.8 | |
| HL_2AW7_006 | 1/A/259:267 | GNRA related | geometric HL_5J7L_006 HL_84299.4 | |
| HL_2AW7_007 | 1/A/296:301 | GNRA | geometric HL_5J7L_007 HL_37824.8 | |
| HL_2AW7_008 | 1/A/320:333 | No text annotation | geometric HL_5J7L_008 HL_81205.3 | |
| HL_2AW7_009 | 1/A/342:347 | UNCG | geometric HL_4LFB_031 HL_34617.5 | |
| HL_2AW7_010 | 1/A/379:384 | GNRA related | geometric HL_3OXE_002 HL_04783.2 | |
| HL_2AW7_011 | 1/A/419:424 | UNCG | geometric HL_5J7L_030 HL_34617.5 | |
| HL_2AW7_013 | 1/A/522:527 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_2AW7_014 | 1/A/617:623 | No text annotation | geometric HL_5J7L_014 HL_10453.3 | |
| HL_2AW7_016 | 1/A/726:731 | GNRA | geometric HL_5J7L_016 HL_37824.8 | |
| HL_2AW7_019 | 1/A/862:867 | GNRA | geometric HL_4LFB_019 HL_37824.8 | |
| HL_2AW7_020 | 1/A/897:902 | GNRA | geometric HL_4V9F_048 HL_37824.8 | |
| HL_2AW7_021 | 1/A/963:972 | No text annotation | geometric HL_4V88_212 NA | |
| HL_2AW7_022 | 1/A/1012:1017 | GNRA | geometric HL_4V88_210 NA | |
| HL_2AW7_023 | 1/A/1028:1033 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_2AW7_024 | 1/A/1076:1081 | GNRA | geometric HL_4V9F_015 HL_37824.8 | |
| HL_2AW7_025 | 1/A/1089:1096 | T-loop related | geometric HL_4LFB_025 HL_77436.5 | |
| HL_2AW7_026 | 1/A/1134:1140 | No text annotation | geometric HL_5J7L_025 HL_87954.2 | |
| HL_2AW7_028 | 1/A/1265:1270 | GNRA | geometric HL_5J7L_027 HL_37824.8 | |
| HL_2AW7_029 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases | geometric HL_5J7L_028 HL_02887.3 | |
| HL_2AW7_030 | 1/A/1356:1366 | No text annotation | geometric HL_4LFB_030 HL_06226.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2AW7_002 | No text annotation | ||
| HL_2AW7_005 | UNCG | ||
| HL_2AW7_012 | No text annotation | ||
| HL_2AW7_015 | No text annotation | ||
| HL_2AW7_017 | No text annotation | ||
| HL_2AW7_018 | No text annotation | ||
| HL_2AW7_027 | GNRA | ||
| HL_2AW7_031 | UNCG | ||
| HL_2AW7_032 | GNRA variation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2AW7_001 | 1/A/30:32, 1/A/552:553 | Single bulged G | geometric IL_5J7L_001 IL_00225.14 | |
| IL_2AW7_002 | 1/A/44:45, 1/A/396:398 | Single bulged A | geometric IL_5J7L_002 IL_31462.7 | |
| IL_2AW7_003 | 1/A/47:52, 1/A/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_2AW7_004 | 1/A/54:56, 1/A/356:357 | Minor groove platform | geometric IL_5J7L_004 IL_51454.3 | |
| IL_2AW7_005 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | geometric IL_5J7L_005 IL_82107.5 | |
| IL_2AW7_006 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW | geometric IL_5J7L_006 IL_90351.1 | |
| IL_2AW7_008 | 1/A/75:76, 1/A/93:95 | Single bulged G | geometric IL_5J7L_395 IL_00225.14 | |
| IL_2AW7_009 | 1/A/128:131, 1/A/231:233 | Isolated non-canonical cWW pair | geometric IL_5J7L_009 IL_57744.1 | |
| IL_2AW7_010 | 1/A/132:136, 1/A/227:230 | Minor groove platform related | geometric IL_5J7L_010 IL_64231.5 | |
| IL_2AW7_011 | 1/A/144:146, 1/A/176:178 | Isolated cWH basepair | geometric IL_3SJ2_003 IL_10167.6 | |
| IL_2AW7_012 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW | geometric IL_5J7L_012 IL_80604.6 | |
| IL_2AW7_014 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | geometric IL_5J7L_014 IL_46174.3 | |
| IL_2AW7_015 | 1/A/249:252, 1/A/274:275 | No text annotation | geometric IL_5J7L_015 IL_47074.2 | |
| IL_2AW7_016 | 1/A/292:293, 1/A/304:308 | C-loop | geometric IL_6CZR_125 NA | |
| IL_2AW7_017 | 1/A/367:369, 1/A/392:393 | Single bulged U | geometric IL_5J7L_017 IL_89505.4 | |
| IL_2AW7_018 | 1/A/371:375, 1/A/389:390 | C-loop | geometric IL_4LFB_015 IL_03109.3 | |
| IL_2AW7_019 | 1/A/375:376, 1/A/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_2AW7_020 | 1/A/409:416, 1/A/427:433 | No text annotation | geometric IL_4LFB_017 IL_28026.3 | |
| IL_2AW7_022 | 1/A/446:450, 1/A/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_2AW7_023 | 1/A/450:454, 1/A/479:483 | No text annotation | ||
| IL_2AW7_024 | 1/A/454:455, 1/A/477:479 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_2AW7_025 | 1/A/458:459, 1/A/472:474 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_2AW7_026 | 1/A/460:462, 1/A/470:471 | Single bulged A | geometric IL_5FJC_001 IL_31462.7 | |
| IL_2AW7_027 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | geometric IL_5J7L_024 IL_41203.4 | |
| IL_2AW7_028 | 1/A/515:521, 1/A/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_2AW7_029 | 1/A/569:575, 1/A/880:881 | No text annotation | geometric IL_5J7L_026 IL_38186.6 | |
| IL_2AW7_030 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | geometric IL_5J7L_027 IL_17136.7 | |
| IL_2AW7_031 | 1/A/594:596, 1/A/644:645 | Major groove platform | geometric IL_1I6U_001 IL_48076.6 | |
| IL_2AW7_032 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | geometric IL_5J7L_029 IL_68140.4 | |
| IL_2AW7_033 | 1/A/605:612, 1/A/628:633 | No text annotation | geometric IL_5J7L_030 IL_78349.3 | |
| IL_2AW7_034 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | geometric IL_1KUQ_001 IL_50694.7 | |
| IL_2AW7_035 | 1/A/658:659, 1/A/746:748 | Single stack bend | geometric IL_5VSU_003 IL_26793.1 | |
| IL_2AW7_036 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | geometric IL_5J7L_033 IL_85033.2 | |
| IL_2AW7_039 | 1/A/774:778, 1/A/804:805 | Left turn | geometric IL_4LFB_032 IL_29346.2 | |
| IL_2AW7_041 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_5J7L_038 IL_41756.4 | |
| IL_2AW7_042 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | geometric IL_5J7L_039 IL_31462.7 | |
| IL_2AW7_043 | 1/A/925:927, 1/A/1390:1391 | Single bulged G | geometric IL_5J7L_040 IL_00225.14 | |
| IL_2AW7_044 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | geometric IL_5J7L_041 IL_47078.3 | |
| IL_2AW7_045 | 1/A/953:954, 1/A/1226:1228 | Minor groove platform | geometric IL_4LFB_038 IL_51454.3 | |
| IL_2AW7_046 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_2AW7_047 | 1/A/998:999, 1/A/1041:1043 | Single stack bend | geometric IL_5TBW_375 NA | |
| IL_2AW7_048 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U | geometric IL_5J7L_046 IL_89505.4 | |
| IL_2AW7_049 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_2AW7_050 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | geometric IL_4LFB_045 IL_95583.2 | |
| IL_2AW7_051 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged A | geometric IL_5J7L_049 IL_31462.7 | |
| IL_2AW7_052 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 IL_28037.2 | |
| IL_2AW7_053 | 1/A/1124:1128, 1/A/1144:1149 | No text annotation | geometric IL_5J7L_051 IL_06691.1 | |
| IL_2AW7_054 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform | geometric IL_5J7L_052 IL_15052.4 | |
| IL_2AW7_055 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_2AW7_056 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation | geometric IL_5J7L_054 IL_09129.2 | |
| IL_2AW7_057 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | geometric IL_4LFB_052 IL_11344.2 | |
| IL_2AW7_058 | 1/A/1259:1263, 1/A/1272:1276 | Triple sheared | geometric IL_5J7L_056 IL_17948.2 | |
| IL_2AW7_059 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2AW7_007 | Minor groove platform | ||
| IL_2AW7_013 | Minor groove platform | ||
| IL_2AW7_021 | No text annotation | ||
| IL_2AW7_037 | No text annotation | ||
| IL_2AW7_038 | Kink-turn | ||
| IL_2AW7_040 | tSH-tHW-tHS | ||
| IL_2AW7_060 | No text annotation | ||
| IL_2AW7_061 | No text annotation | ||
| IL_2AW7_062 | Isolated non-canonical cWW pair | ||
| IL_2AW7_063 | Not an internal loop | ||
| IL_2AW7_064 | Isolated non-canonical cWW pair | ||
| IL_2AW7_065 | Double sheared | ||
| IL_2AW7_066 | Triple sheared related | ||
| IL_2AW7_067 | Minor groove platform | ||
| IL_2AW7_068 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2AW7_001 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | geometric J3_5J7L_004 J3_85054.4 | |
| J3_2AW7_002 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation | geometric J3_4LFB_002 J3_25303.4 | |
| J3_2AW7_003 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation | geometric J3_5J7L_005 J3_52655.4 | |
| J3_2AW7_004 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation | geometric J3_4LFB_004 J3_83516.4 | |
| J3_2AW7_005 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation | geometric J3_5J7L_007 J3_82572.1 | |
| J3_2AW7_006 | 1/A/1003:1006, 1/A/1023:1027, 1/A/1034:1037 | No text annotation | ||
| J3_2AW7_007 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | geometric J3_5J7L_008 J3_08394.3 | |
| J3_2AW7_008 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | geometric J3_5J7L_010 J3_82365.4 | |
| J3_2AW7_009 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation | geometric J3_5J7L_011 J3_37047.6 |
Problematic loops
No problematic loops
Coloring options: